Procedures Page
Autof ms Workflow Methods
Isolate –
Enterobacteriaceae
Enterobacter spp
Enterococcus spp
Acinetobacter baumannii
Bacteroides fragilis
Burkholderia cepacia
Clostridium difficile
Clostridium sordellii
Enterococcus faecalis
Escherichia coli
Klebsiella pneumoniae
Methicillin-resistant
Staphylococcus aureus
Morganella morganii
Mycobacterium abscessus
Psuedomonas aeruginosa
Staphylococcus aureus
Stenotrophomonas maltophilia
Mycobacterium tuberculosis
Achromobacter xylosoxidans
Proteus mirabilis
Acinetobacter baumanii complex
Proteus vulgaris
Aeromonas hydrophila/caviae
Providencia rettgeri
Citrobacter freundii complex
Pseudomonas aeruginosa
Citrobacter koseri
Pseudomonas fluorescens
Isolate – Anaerobic Gram-Negative bacteria
Yersinia
Pseudomonas
Proteus
Paenibacillus
Haemophilus
Bacteroides
Fusobacterium
Isolate – other Gram- negative bacteria: Neisseria
Moraxella
HACEK group non- fermentative isolates and Brucella species.
Isolate – Anaerobic Gram-Positive bacteria:
Peptostreptococcus
Peptococcun
Anaerococcus
Peptoniphilus
Gallicola
Finegoldia
Micromona
Ruminococcus
Slackia
S.hansenii
S.pleomorphus
Isolate – Nocardia & Actinomycetes
Nocardia spp
Actinomyces spp
Isolate – other Gram-
Isolate – Mycobacterium Mycobacterium parafortuitum
Mycobacterium parascrofulaceum
Mycobacterium peregrinum
Mycobacterium phlei
Mycobacterium porcinum
Mycobacterium tuberculosis
Mycobacterium ulcerans
Mycobacterium vaccae
Mycobacterium xenopi
Mycoplana ramosa
Isolate Gram-positive bacteria:
Staphylococcus
Streptococcus
Listeria
Corynebacterium
Clostridium
Isolate Gram-positive bacteria:
Escherichia coli
Pseudomonas aeruginosa,
Proteus Shigella
Sample – Blood Culture (Gram Positive Cocci)：
Staphylococcus
Streptococcus
Blood Culture (Gram- positive bacilli):
Bacillus anthracis,
Bacillus diphtheria,
Bacillus tetanus
Blood Culture (Gram Negative Cocci):
Neisseria
Gonococcus Rongococcus,
Aminococcus,
Macrococcus Sample
– Blood Culture (Gram Negative bacilli):
Shigella
Typhoid Escherichia coli
Proteus Pseudomonas aeruginosa
Bacillus pertussis
Sample – Blood Culture (Yeast):
Candida albicans
Candida tropicalis
Candida glabrata
Candida krusei
Candida parapsilosis
Cryptococcus neoforman
Isolate – Moulds:
Absidia spp
Aspergillus spp
Curvularia spp
Mucor spp
Microsporum spp
Fusarium spp
Paecilomyces spp
Penicillium spp
Phoma spp
Penicillium spp
Rhizopus spp
Trichosporon spp
Thanatephorus cucumeris
Syncephalastrum racemosum
Talaromyces funiculosus
Streptosporangium sibiricum
Sporothrix schenckii
Saprochaete clavata
Saprochaete suaveolens
Sarocladium strictum
Scedosporium apiospermum (Pseudallescheria boydii)
Scedosporium prolificans
Schizophyllum commune
Scopulariopsis acremonium
Scopulariopsis brevicaulis (Microascus brevicaulis)
Scopulariopsis brumptii
Scytalidium lignicola
Lichtheimia corymbifera
Lecythophora hoffmannii
Sample – CSF (Gram Positive Cocci):
Staphylococcus
Streptococcus
Sample – CSF (Gram Positive Bacilli):
Bacillus anthracis
Bacillus diphtheria
Bacillus tetanus
Sample – CSF (Gram Negative Cocci):
Neisseria
Gonococcus
Rongococcus
Aminococcus
Macrococcus
Sample – CSF (Gram Negative bacilli):
Shigella
Typhoid
Escherichia coli
Proteus
Pseudomonas aeruginosa,
Bacillus pertussis
Sample – CSF (Yeast): Candida albicans
Candida tropicalis
Candida glabrata
Candida krusei
Candida parapsilosis
Cryptococcus neoforman
Autof ms Workflow Methods
Direct
Species
Isolate – Enterobacteriaceae Enterobacter spp Enterococcus spp Acinetobacter baumannii Bacteroides fragilis Burkholderia cepacia Clostridium difficile Clostridium sordellii Enterococcus faecalis Escherichia coli
Klebsiella pneumoniae Methicillin-resistant Staphylococcus aureus Morganella morganii Mycobacterium abscessus Psuedomonas aeruginosa Staphylococcus aureus Stenotrophomonas maltophilia Mycobacterium tuberculosis Achromobacter xylosoxidans
Proteus mirabilis Acinetobacter baumanii complex
Proteus vulgaris Aeromonas hydrophila/caviae Providencia rettgeri Citrobacter freundii complex
Pseudomonas aeruginosa Citrobacter koseri Pseudomonas fluorescens
Isolate – Anaerobic Gram-Negative bacteria
Yersinia Pseudomonas Proteus Paenibacillus Haemophilus Bacteroides Fusobacterium
Isolate – other Gram- negative bacteria: Neisseria
Moraxella
HACEK group non- fermentative isolates and Brucella species.
Isolate – Anaerobic Gram-Positive bacteria:
Peptostreptococcus Peptococcun Anaerococcus Peptoniphilus Gallicola
Finegoldia Micromona Ruminococcus Slackia）
S.hansenii S.pleomorphus
Isolate – Nocardia & Actinomycetes Nocardia spp Actinomyces spp Isolate – other Gram-
Isolate – Mycobacterium Mycobacterium parafortuitum Mycobacterium parascrofulaceum Mycobacterium peregrinum Mycobacterium phlei Mycobacterium porcinum Mycobacterium tuberculosis Mycobacterium ulcerans Mycobacterium vaccae Mycobacterium xenopi
Mycoplana ramosa Please add some more
Isolate Gram-positive bacteria: Staphylococcus Streptococcus
Listeria Corynebacterium Clostridium
Isolate Gram-positive bacteria:
Escherichia coli Pseudomonas aeruginosa, Proteus Shigella
Sample – Blood Culture (Gram Positive Cocci)：
Staphylococcus Streptococcus
Blood Culture (Gram- positive bacilli):
Bacillus anthracis, Bacillus diphtheria, Bacillus tetanus
Blood Culture (Gram Negative Cocci):
Neisseria
Gonococcus Rongococcus, Aminococcus,
Macrococcus Sample
– Blood Culture (Gram Negative bacilli):
Shigella
Typhoid Escherichia coli Proteus Pseudomonas aeruginosa Bacillus pertussis
Sample – Blood Culture (Yeast):
Candida albicans Candida tropicalis Candida glabrata Candida krusei
Candida parapsilosis Cryptococcus neoforman
Isolate – Moulds:
Absidia spp Aspergillus spp Curvularia spp Mucor spp Microsporum spp Fusarium spp Paecilomyces spp Penicillium spp Phoma spp Penicillium spp Rhizopus spp Trichosporon spp
Thanatephorus cucumeris Syncephalastrum racemosum Talaromyces funiculosus Streptosporangium sibiricum Sporothrix schenckii Saprochaete clavata Saprochaete suaveolens Sarocladium strictum Scedosporium apiospermum (Pseudallescheria boydii)
Scedosporium prolificans Schizophyllum commune Scopulariopsis acremonium Scopulariopsis brevicaulis (Microascus brevicaulis) Scopulariopsis brumptii Scytalidium lignicola Lichtheimia corymbifera Lecythophora hoffmannii
Sample – CSF (Gram Positive Cocci): Staphylococcus Streptococcus
Sample – CSF (Gram Positive Bacilli):
Bacillus anthracis Bacillus diphtheria Bacillus tetanus
Sample – CSF (Gram Negative Cocci):
Neisseria Gonococcus Rongococcus Aminococcus Macrococcus
Sample – CSF (Gram Negative bacilli):
Shigella
Typhoid Escherichia coli Proteus Pseudomonas aeruginosa, Bacillus pertussis
Sample – CSF (Yeast): Candida albicans Candida tropicalis Candida glabrata Candida krusei Candida parapsilosis
Cryptococcus neoforman
